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Identification of South Indian Muslims by Sequencing the Control Region of Mitochondrial DNA | ||
| Journal of Genetic Resources | ||
| دوره 9، شماره 2، 2023، صفحه 215-221 اصل مقاله (286.2 K) | ||
| نوع مقاله: Research Article | ||
| شناسه دیجیتال (DOI): 10.22080/jgr.2023.25572.1361 | ||
| نویسندگان | ||
| Somayyeh Samehsalari* 1؛ Koohyar Mohsenpour1؛ Adimoolam Chandrasekar2 | ||
| 1Department of Social Sciences, Faculty of Humanities and Social Sciences, University of Mazandaran, Babolsar, Iran | ||
| 2Anthropological Survey of India, Southern Regional Center, Bogadi, Mysore , India | ||
| تاریخ دریافت: 11 اردیبهشت 1402، تاریخ بازنگری: 12 تیر 1402، تاریخ پذیرش: 12 تیر 1402 | ||
| چکیده | ||
| Mitochondrial DNA (mtDNA) analysis has proven to be an excellent tool for studying the genetic ancestry of many populations. It is also helpful for forensic investigations because of its unique qualities, such as a high mutation rate, maternal mode of inheritance, a high quantity of copies in cells, and control region with specific genetic markers. Therefore, the present study is conducted to establish high-quality forensic data, as well as to assign predominant haplogroups by studying variations generated from mitochondrial DNA control regions among the south Indian Muslims. To this aim, 5ml blood samples were collected from 60 healthy unrelated Muslim individuals of Srirangapatna town in Karnataka state, South India. DNA extracted from the blood sample was amplified, and the sequence of the control region of mtDNA was determined by the Sanger method. Using these sequence data, 48 different haplotypes and 113 polymorphic positions were defined. Of the 48 haplotypes assessed, 40 were unique, and eight were observed in more than one individual. Diversity indices such as genetic diversity, power of discrimination, and random match probability were 0.9870, 0.9705, and 0.0294, respectively. The mean of pairwise differences was estimated at 14.671751 +/- 6.659951 and nucleotide diversity at 0.019229 +/- 0.009680. Consequently, the low random match probability and high genetic diversity were obtained from the present data, while previous studies suggest a high heterogeneity in the Indian Muslim population. The haplogroup pattern and its frequency were indicative of the composition of South Asian (52%), West Eurasian (28%), and West Asian (20%) genetic content in this population. The diversity indices and phylogenetic findings confirm the high potential of mtDNA control region polymorphisms in forensic investigation casework and phylogenetic studies. | ||
| کلیدواژه‌ها | ||
| Control region؛ Forensic؛ mtDNA؛ Phylogenetic | ||
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| مراجع | ||
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Aarzoo, S. S., & Afzal, M. (2005). Gene diversity in some Muslim populations of North India. Human Biology, 77(3), 343-353. https://doi.org/10.1353/hub.2005.0046 Abu-Amero, K. K., Larruga, J. M., Cabrera, V. M., & González, A. M. (2008). Mitochondrial DNA structure in the Arabian Peninsula. BMC Evolutionary Biology, 8, 1-15. https://doi.org/10.1186/1471-2148-8-45 Alves-Silva, J., da Silva Santos, M., Guimarães, P. E., Ferreira, A. C., Bandelt, H. J., Pena, S. D., & Prado, V. F. (2000). The ancestry of Brazilian mtDNA lineages. The American Journal of Human Genetics, 67(2), 444-461. https://doi.org/10.1086/303004 Andrews, R. M., Kubacka, I., Chinnery, P. F., Lightowlers, R. N., Turnbull, D. M., & Howell, N. (1999). Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA. Nature Genetics, 23(2), 147-147. https://doi.org/10.1038/13779 Balgir, R. S., & Sharma, J. C. (1988). Genetic markers in the Hindu and Muslim Gujjars of northwestern India. American Journal of Physical Anthropology, 75(3), 391-403. https://doi.org/10.1002/ajpa.1330750310 Barik, S. S., Sahani, R., Prasad, B. V. R., Endicott, P., Metspalu, M., Sarkar, B. N., ... & Rao, V. R. (2008). Detailed mtDNA genotypes permit a reassessment of the settlement and population structure of the Andaman Islands. American Association of Physical Anthropologists, 136(1), 19-27. https://doi.org/10.1002/ajpa.20773 Cann, R. L., Stoneking, M., & Wilson, A. C. (1987). Mitochondrial DNA and human evolution. Nature, 325(6099), 31-36. https://doi.org/10.1038/325031a0 Chandrasekar, A., Kumar, S., Sreenath, J., Sarkar, B. N., Urade, B. P., Mallick, S., ... & Rao, V. R. (2009). Updating phylogeny of mitochondrial DNA macrohaplogroup m in India: dispersal of modern human in South Asian corridor. PloS One, 4(10), e7447. https://doi.org/10.1371/journal.pone.0007447 Chaubey, G., Karmin, M., Metspalu, E., Metspalu, M., Selvi-Rani, D., Singh, V. K., ... & Villems, R. (2008). Phylogeography of mtDNA haplogroup R7 in the Indian peninsula. BMC Evolutionary Biology, 8(1), 1-12. https://doi.org/10.1186/1471-2148-8-227 Chen, Y. S., Torroni, A., Excoffier, L., Santachiara-Benerecetti, A. S., & Wallace, D. C. (1995). Analysis of mtDNA variation in African populations reveals the most ancient of all human continent-specific haplogroups. American Journal of Human Genetics, 57(1), 133-149. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1801234/ Cordaux, R., Saha, N., Bentley, G. R., Aunger, R., Sirajuddin, S. M., & Stoneking, M. (2003). Mitochondrial DNA analysis reveals diverse histories of tribal populations from India. European Journal of Human Genetics, 11(3), 253-264. https://doi.org/10.1038/sj.ejhg.5200949 Derenko, M., Malyarchuk, B., Bahmanimehr, A., Denisova, G., Perkova, M., Farjadian, S., & Yepiskoposyan, L. (2013). Complete mitochondrial DNA diversity in Iranians. PloS One, 8(11), e80673. https://doi.org/10.1371/journal.pone.0080673 Eaaswarkhanth, M., Dubey, B., Meganathan, P. R., Ravesh, Z., Khan, F. A., Singh, L., ... & Haque, I. (2009). Diverse genetic origin of Indian Muslims: evidence from autosomal STR loci. Journal of Human Genetics, 54(6), 340-348. https://doi.org/10.1038/jhg.2009.38 Eaaswarkhanth, M., Haque, I., Ravesh, Z., Romero, I. G., Meganathan, P. R., Dubey, B., ... & Thangaraj, K. (2010). Traces of sub-Saharan and Middle Eastern lineages in Indian Muslim populations. European Journal of Human Genetics, 18(3), 354-363. https://doi.org/10.1038/ejhg.2009.168 Eaaswarkhanth, M., Vasulu, T. S., & Haque, I. (2008). Genetic affinity between diverse ethnoreligious communities of Tamil Nadu, India: a microsatellite study. Human Biology, 80(6), 601-609. https://doi.org/10.3378/1534-6617-80.6.601 Excoffier, L., & Lischer, H. E. (2010). Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Molecular Ecology Resources, 10(3), 564-567. https://doi.org/10.1111/j.1755-0998.2010.02847.x Gutala, R., Carvalho-Silva, D. R., Jin, L., Yngvadottir, B., Avadhanula, V., Nanne, K., ... & Tyler-Smith, C. (2006). A shared Y-chromosomal heritage between Muslims and Hindus in India. Human Genetics, 120, 543-551. https://doi.org/10.1007/s00439-006-0234-x Khan, F., Pandey, A. K., Tripathi, M., Talwar, S., Bisen, P. S., Borkar, M., & Agrawal, S. (2007). Genetic affinities between endogamous and inbreeding populations of Uttar Pradesh. BMC Genetics, 8(1), 1-11. https://doi.org/10.1186/1471-2156-8-12 Kivisild, T., Bamshad, M. J., Kaldma, K., Metspalu, M., Metspalu, E., Reidla, M., ... & Villems, R. (1999a). Deep common ancestry of Indian and western-Eurasian mitochondrial DNA lineages. Current Biology, 9(22), 1331-1334. https://doi.org/10.1016/s0960-9822(00)80057-3 Kivisild, T., Kaldma, K., Metspalu, M., Parik, J., Papiha, S., & Villems, R. (1999b). The place of the Indian Mitochondrial DNA variants in the global network of maternal lineages and the peopling of the old world. In: Papiha, S.S., Deka, R., Chakraborty, R. (eds) Genomic Diversity. Springer, Boston, MA. https://doi.org/10.1007/978-1-4615-4263-6_11 Kumar, S., Padmanabham, P. B. S. V., Ravuri, R. R., Uttaravalli, K., Koneru, P., Mukherjee, P. A., ... & Rao, V. R. (2008). The earliest settlers' antiquity and evolutionary history of Indian populations: evidence from M2 mtDNA lineage. BMC Evolutionary Biology, 8, 1-14. https://doi.org/10.1186/1471-2148-8-230 Kumar, S., Stecher, G., & Tamura, K. (2016). MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Molecular Biology and Evolution, 33(7), 1870-1874. https://doi.org/10.1093/molbev/msw054 Metspalu, M., Kivisild, T., Metspalu, E., Parik, J., Hudjashov, G., Kaldma, K., ... & Villems, R. (2004). Most of the extant mtDNA boundaries in south and southwest Asia were likely shaped during the initial settlement of Eurasia by anatomically modern humans. BMC Genetics, 5(1), 1-25. https://doi.org/10.1186/1471-2156-5-26 Mohsenpour, K., Chandrasekar, A., & Samehsalari, S. (2021). Sequence-length variation of mtDNA HVR-I C-stretch in the Muslim population of South India. International Research Journal, 7(1), 60-75. https://doi.org/10.21276/tr.2020.6.4.AN7 Palanichamy, M. G., Sun, C., Agrawal, S., Bandelt, H. J., Kong, Q. P., Khan, F., ... & Zhang, Y. P. (2004). Phylogeny of mitochondrial DNA macrohaplogroup N in India, based on complete sequencing: implications for the peopling of South Asia. The American Journal of Human Genetics, 75(6), 966-978. https://doi.org/10.1086/425871 Palanichamy, M. G., Mitra, B., Zhang, C. L., Debnath, M., Li, G. M., Wang, H. W., ... & Zhang, Y. P. (2015). West Eurasian mtDNA lineages in India: an insight into the spread of the Dravidian language and the origins of the caste system. Human Genetics, 134, 637-647. https://doi.org/10.1007/s00439-015-1547-4 Passarino, G., Semino, O., Bernini, L. F., & Santachiara-Benerecetti, A. S. (1996). Pre-Caucasoid and Caucasoid genetic features of the Indian population, revealed by mtDNA polymorphisms. American Journal of Human Genetics, 59(4), 927-934. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1914800/ Quintana-Murci, L., Semino, O., Bandelt, H. J., Passarino, G., McElreavey, K., & Santachiara-Benerecetti, A. S. (1999). Genetic evidence of an early exit of Homo sapiens from Africa through Eastern Africa. Nature Genetics, 23(4), 437-441. https://doi.org/10.1038/70550 Rajkumar, R., Banerjee, J., Gunturi, H. B., Trivedi, R., & Kashyap, V. K. (2005). Phylogeny and antiquity of M macrohaplogroup inferred from complete mt DNA sequence of Indian specific lineages. BMC Evolutionary Biology, 5, 1-8. https://doi.org/10.1186/1471-2148-5-26 Rakha, A., Peng, M. S., Bi, R., Song, J. J., Salahudin, Z., Adan, A., ... & Yao, Y. G. (2016). EMPOP-quality mtDNA control region sequences from Kashmiri of Azad Jammu & Kashmir, Pakistan. Forensic Science International Genetics, 25, 125-131. https://doi.org/10.1016/j.fsigen.2016.08.009 Rej, P. H., Deka, R., & Norton, H. L. (2017). Understanding influences of culture and history on mtDNA variation and population structure in three populations from Assam, Northeast India. American Journal of Human Biology, 29(3), e22955. https://doi.org/10.1002/ajhb.22955 Roychoudhury, S., Roy, S., Basu, A., Banerjee, R., Vishwanathan, H., Usha Rani, M., ... & Majumder, P. P. (2001). Genomic structures and population histories of linguistically distinct tribal groups of India. Human Genetics, 109, 339-350. https://doi.org/10.1007/s004390100577 Samehsalari, S., & Chandrasekar, A. (2021). Forensic genetic analysis of mitochondrial DNA hypervariable region III sequences in Muslims from South India. Journal of Genetic Resources, 7(2), 220-226. https://doi.org/10.22080/jgr.2021.20887.1239 Samehsalari, S., & Reddy, K. R. (2019). Mitochondrial DNA (CA) n dinucleotide repeats in Muslims from South India. International Journal of Modern Anthropology, 2(12), 142-152. https://doi.org/10.4314/ijma.v2i12.6 Stoneking, M., Hedgecock, D., Higuchi, R. G., Vigilant, L., & Erlich, H. A. (1991). Population variation of human mtDNA control region sequences detected by enzymatic amplification and sequence-specific oligonucleotide probes. American Journal of Human Genetics, 48(2), 370- 382. https://www.cell.com/ajhg/covers-archive Sun, C., Kong, Q. P., Palanichamy, M. G., Agrawal, S., Bandelt, H. J., Yao, Y. G., ... & Zhang, Y. P. (2006). The dazzling array of basal branches in the mtDNA macrohaplogroup M from India as inferred from complete genomes. Molecular Biology and Evolution, 23(3), 683-690. https://doi.org/10.1093/molbev/msj078 Sylvester, C., Krishna, M. S., Rao, J. S., & Chandrasekar, A. (2018). Neolithic phylogenetic continuity inferred from complete mitochondrial DNA sequences in a tribal population of Southern India. Genetica, 146(4-5), 383-389. https://doi.org/10.1007/s10709-018-0030-2 Terreros, M. C., Rowold, D., Luis, J. R., Khan, F., Agrawal, S., & Herrera, R. J. (2007). North Indian Muslims: enclaves of foreign DNA or Hindu converts? American Journal of Physical Anthropology, 133(3), 1004-1012. https://doi.org/10.1002/ajpa.20600 Thangaraj, K., Chaubey, G., Kivisild, T., Reddy, A. G., Singh, V. K., Rasalkar, A. A., & Singh, L. (2005). Reconstructing the origin of Andaman Islanders. Science, 308(5724), 996-996. https://doi.org/10.1126/science.1109987 Torroni, A., Huoponen, K., Francalacci, P., Petrozzi, M., Morelli, L., Scozzari, R., ... & Wallace, D. C. (1996). Classification of European mtDNAs from an analysis of three European populations. Genetics, 144(4), 1835-1850. https://doi.org/10.1093/genetics/144.4.1835 Torroni, A., Miller, J. A., Moore, L. G., Zamudio, S., Zhuang, J., Droma, T., & Wallace, D. C. (1994). Mitochondrial DNA analysis in Tibet: implications for the origin of the Tibetan population and its adaptation to high altitude. American Journal of Physical Anthropology, 93(2), 189-199. https://doi.org/10.1002/ajpa.1330930204 Verma, K., Sharma, S., Sharma, A., Dalal, J., & Bhardwaj, T. (2018). Data on haplotype diversity in the hypervariable region I, II and III of mtDNA amongst the Brahmin population of Haryana. Data in Brief, 17, 305-313. https://doi.org/10.1016/j.dib.2018.01.011 | ||
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